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SINGLE-PARTICLE TRACKING DATASET

COMING SOON

Investigating the dynamics of various transcription factors and chromatin regulators.

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MICRO-C DATASET

Data is available at Higlass 3D genome browser and 4DN data portal.

COHESIN RESIDENCY DETERMINES CHROMATIN LOOP PATTERNS

​Budding yeast

  1. A364 WT

  2. mcd1-AID

  3. brn1-AID

  4. wpl1-AID

  5. pds5-AID

  6. Time courses released from G1-arrest

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RESOLVING THE 3D LANDSCAPE OF TRANSCRIPTION-LINKED MAMMALIAN CHROMATIN FOLDING

Mouse embryonic stem cells

  1. WT

  2. Flavopiridol

  3. Triptolide

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ULTRASTRUCTURAL DETAILS OF MAMMALIAN CHROMOSOME ARCHITECTURE


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3D ATAC-PALM: SUPER-RESOLUTION IMAGING OF THE ACCESSIBLE GENOME

Mouse embryonic stem cells

  1. WT

  2. CTCF-AID

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DISTINCT CLASSES OF CHROMATIN LOOPS REVEALED BY DELETION OF AN RNA-BINDING REGION IN CTCF

Mouse embryonic stem cells

  1. WT

  2. CTCF-RBRi deletion

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TRANSFER RNA GENES AFFECT CHROMOSOME STRUCTURE AND FUNCTION VIA LOCAL EFFECTS

Budding yeast

  1. tDNA2334 strain

  2. tDNA690 strain

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MICRO-C XL: ASSAYING CHROMOSOME CONFORMATION FROM THE NUCLEOSOME TO THE ENTIRE GENOME

Budding yeast with various crosslinking conditions in the insoluble and soluble fractions

  • 1% FA + DSG/EGS

  • 3% FA + DSG/EGS

Fission yeast with various crosslinking conditions in the insoluble and soluble fractions​

  • 3% FA + DSG/EGS

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MAPPING NUCLEOSOME RESOLUTION CHROMOSOME FOLDING IN YEAST BY MICRO-C

Budding yeast
Various treatments including diamide and thiolutin, and mutations including med1d, rnh201d, rpd3d, rtt109d, top1d, ssu72-2, rgr1-100, rsc8-21, scc2-4, sth1-2 H4d4-14, H4K16Q, H4Q93E, H4R23A,

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Get in touch to learn more about our published research.

HISTONE MODIFICATION DATASET

HIGH-RESOLUTION CHROMATIN DYNAMICS DURING A YEAST STRESS RESPONSE

Comprehensive ChIP-seq data for histone modifications in budding yeast.

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